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plastome sequences  (Biotechnology Information)

 
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    Biotechnology Information plastome sequences
    Plastome Sequences, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/plastome+sequences/sequences+%E2%80%A1genome/10__1134_slash_s1021443725606755-60-1-13
    Average 86 stars, based on 1 article reviews
    plastome sequences - by Bioz Stars, 2026-09
    86/100 stars

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    Related Articles

    other:

    Article Title: New plastome structural rearrangements discovered in core Tillandsioideae (Bromeliaceae) support recently adopted taxonomy
    Article Snippet: Complete plastome sequences for more than 10,300 vascular plant species have been made publicly available at the National Center for Biotechnology Information until March 2022 (NCBI, only verified and circular DNA sequences considered).

    Algae:

    Article Title: Plastid Genomes of the Early Vascular Plant Genus Selaginella Have Unusual Direct Repeat Structures and Drastically Reduced Gene Numbers
    Article Snippet: .. An analysis of the 3507 plastome sequences from algae to seed plants at the National Center for Biotechnology Information (NCBI) as of November 2019 [ ] revealed an average GC content of 37.38 ± 2.26%. ..



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    Complete <t>plastome</t> map of O. thermale , containing six tracks. From the center, the first track shows the dispersed repeats exhibiting direct (red) and palindromic (green) repeats. The second and third tracks show the long and short tandem repeats, respectively. The regional composition of the genome, containing a large single copy, a small single copy, and two inverted regions, are identified on the fourth track. The guanine-cytosine content along the genome is plotted in the fifth track. The genes are shown on the outer sixth track.
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    Complete <t>plastome</t> map of O. thermale , containing six tracks. From the center, the first track shows the dispersed repeats exhibiting direct (red) and palindromic (green) repeats. The second and third tracks show the long and short tandem repeats, respectively. The regional composition of the genome, containing a large single copy, a small single copy, and two inverted regions, are identified on the fourth track. The guanine-cytosine content along the genome is plotted in the fifth track. The genes are shown on the outer sixth track.
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    ML tree inferred from complete <t>plastomes</t> generated by this study. ML bootstrap support (BS) values are shown at nodes. Clades were set to polytomy when BS < 50%. Species with multiple individuals sampled were marked with dots at branch ends, with black indicating monophyly, while red indicating non-monophyly
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    ML tree inferred from complete <t>plastomes</t> generated by this study. ML bootstrap support (BS) values are shown at nodes. Clades were set to polytomy when BS < 50%. Species with multiple individuals sampled were marked with dots at branch ends, with black indicating monophyly, while red indicating non-monophyly
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    Detailed information on the plastomes used for the phylogenetic analysis in <xref ref-type= Figure 2 ." width="100%" height="100%">

    Journal: Frontiers in Plant Science

    Article Title: Comparative plastome assembly of the yellow ironweed ( Verbesina alternifolia ) using Nanopore and Illumina reads

    doi: 10.3389/fpls.2024.1429494

    Figure Lengend Snippet: Detailed information on the plastomes used for the phylogenetic analysis in Figure 2 .

    Article Snippet: A total of 28 chloroplast genomes of taxa closely related to Verbesina alternifolia (from the Heliantheae alliance ) were downloaded from GenBank and aligned with the two obtained plastomes (i.e., from Illumina and Nanopore sequencing).

    Techniques:

    Comparison of the mapping results for the short Illumina reads when using as reference the plastomes assembled with Illumina or Nanopore reads and two different mapping programs.

    Journal: Frontiers in Plant Science

    Article Title: Comparative plastome assembly of the yellow ironweed ( Verbesina alternifolia ) using Nanopore and Illumina reads

    doi: 10.3389/fpls.2024.1429494

    Figure Lengend Snippet: Comparison of the mapping results for the short Illumina reads when using as reference the plastomes assembled with Illumina or Nanopore reads and two different mapping programs.

    Article Snippet: A total of 28 chloroplast genomes of taxa closely related to Verbesina alternifolia (from the Heliantheae alliance ) were downloaded from GenBank and aligned with the two obtained plastomes (i.e., from Illumina and Nanopore sequencing).

    Techniques: Comparison

    ML phylogenetic tree including Verbesina plastomes assembled from Illumina and Nanopore reads, along with plastomes from members of the Heliantheae alliance available on the GenBank ( <xref ref-type= Table 1 ). The numbers above the branches are bootstrap support values. On the right part of the figure, the subtribal membership of the accessions is indicated. Colors are according to subtribes in the Heliantheae alliance . " width="100%" height="100%">

    Journal: Frontiers in Plant Science

    Article Title: Comparative plastome assembly of the yellow ironweed ( Verbesina alternifolia ) using Nanopore and Illumina reads

    doi: 10.3389/fpls.2024.1429494

    Figure Lengend Snippet: ML phylogenetic tree including Verbesina plastomes assembled from Illumina and Nanopore reads, along with plastomes from members of the Heliantheae alliance available on the GenBank ( Table 1 ). The numbers above the branches are bootstrap support values. On the right part of the figure, the subtribal membership of the accessions is indicated. Colors are according to subtribes in the Heliantheae alliance .

    Article Snippet: A total of 28 chloroplast genomes of taxa closely related to Verbesina alternifolia (from the Heliantheae alliance ) were downloaded from GenBank and aligned with the two obtained plastomes (i.e., from Illumina and Nanopore sequencing).

    Techniques:

    Complete plastome map of O. thermale , containing six tracks. From the center, the first track shows the dispersed repeats exhibiting direct (red) and palindromic (green) repeats. The second and third tracks show the long and short tandem repeats, respectively. The regional composition of the genome, containing a large single copy, a small single copy, and two inverted regions, are identified on the fourth track. The guanine-cytosine content along the genome is plotted in the fifth track. The genes are shown on the outer sixth track.

    Journal: Mitochondrial DNA. Part B, Resources

    Article Title: Sequencing of the complete plastome of the thermal adder’s-tongue fern, Ophioglossum thermale Kom. (Ophioglossaceae)

    doi: 10.1080/23802359.2024.2387255

    Figure Lengend Snippet: Complete plastome map of O. thermale , containing six tracks. From the center, the first track shows the dispersed repeats exhibiting direct (red) and palindromic (green) repeats. The second and third tracks show the long and short tandem repeats, respectively. The regional composition of the genome, containing a large single copy, a small single copy, and two inverted regions, are identified on the fourth track. The guanine-cytosine content along the genome is plotted in the fifth track. The genes are shown on the outer sixth track.

    Article Snippet: The complete plastome sequence was submitted to the National Center for Biotechnology Information (NCBI) database under the accession number PP588400.

    Techniques:

    ML tree inferred from complete plastomes generated by this study. ML bootstrap support (BS) values are shown at nodes. Clades were set to polytomy when BS < 50%. Species with multiple individuals sampled were marked with dots at branch ends, with black indicating monophyly, while red indicating non-monophyly

    Journal: BMC Plant Biology

    Article Title: Testing plastomes and nuclear ribosomal DNA sequences as the next-generation DNA barcodes for species identification and phylogenetic analysis in Acer

    doi: 10.1186/s12870-024-05073-w

    Figure Lengend Snippet: ML tree inferred from complete plastomes generated by this study. ML bootstrap support (BS) values are shown at nodes. Clades were set to polytomy when BS < 50%. Species with multiple individuals sampled were marked with dots at branch ends, with black indicating monophyly, while red indicating non-monophyly

    Article Snippet: All complete plastomes and nrDNA sequences used in this study are available from the National Center for Biotechnology Information (NCBI) (see Table , ) and the Science Data Bank at 10.57760/sciencedb.18484.

    Techniques: Generated